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Species belonging to selected taxon:
Panicum virgatum
ABOUT THIS RECORD
ID:
MNEST001856
species:
Panicum virgatum
miRNA family:
MIR528
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAAGGGGCATGCAGAGGAG
miRNA*
CCTGTGCCTGCCTCTTCCATT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGCAGCAGCAG
TGGAAGGGGCATGCAGAGGAG
CAGGACCTCCGGTTGGAAGCCGACCTGTGTGTGCTACCCTCGCTCACTCT
CCTGTGCCTGCCTCTTCC
ATT
CCTGCTGC
dot-bracket secondary structure
.(((((((.((
(((((((((((.(((.(((((
((((.....((((.....)))).)))).(((.((.......)).))).))
))).))).))))))))))
)))
.)))))))
SIMILARITIES
miRBase
bdi-MIR528
:
0.00000000002
PMRD
osa-miR528
:
0.000000006
microPC
miR528
:
1e-16
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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